Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 43
  seen in >= 2 oysters: 24
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

31 CpGs in target; 29 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    28.7    115        1    9.4
Qui1     Qui    42.5    454        0   30.5
Qui2     Qui    45.3    320        1   22.8
Qui3     Qui    47.8    134        1   13.1
Qui4     Qui    30.8    347        1   20.1
Rio1     Rio    23.0    217        1   13.5
Rio2     Rio     9.4    319        1   22.0
Rio3     Rio     2.6    117        0    6.1
Rio4     Rio     9.5    221        1   15.0