Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 16
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 13  [CpG-destroying: 6]
    132289139 A>T  Pum=1.0  Qui=0.72  Rio=0.036
    132289171 A>T  Pum=1.0  Qui=0.769  Rio=0.032
    132289174 A>G  Pum=0.875  Qui=0.741  Rio=0.031
    132289203 C>T  Pum=  Qui=0.818  Rio=0.091
    132289328 G>A  Pum=  Qui=0.714  Rio=0.053
    132289605 A>T  Pum=  Qui=0.5  Rio=0.0
    132289634 G>A  Pum=  Qui=0.583  Rio=0.0
    132289642 T>A  Pum=0.8  Qui=0.692  Rio=0.045
    132289651 T>A  Pum=0.8  Qui=0.667  Rio=0.0
    132289691 T>A  Pum=0.889  Qui=0.72  Rio=0.0
    132289734 G>A  Pum=1.0  Qui=0.714  Rio=0.0
    132289818 G>A  Pum=  Qui=0.824  Rio=0.0
    132289889 G>A  Pum=  Qui=0.812  Rio=0.067

10 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    53.8     39        0    7.0
Qui1     Qui    55.8     43        0    6.1
Qui2     Qui    45.8     24        0    6.1
Qui3     Qui    70.8     48        0    7.3
Qui4     Qui    71.4     49        0    7.3
Rio1     Rio    84.4     45        0   11.2
Rio2     Rio    85.7     42        0    6.4
Rio3     Rio    85.0     20        0    5.6
Rio4     Rio    92.3     39        0    9.5