Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 37
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 0]
    132145172 G>T  Pum=  Qui=0.0  Rio=0.75
    132145611 G>T  Pum=0.0  Qui=0.0  Rio=0.714
    132145748 A>G  Pum=0.0  Qui=0.0  Rio=0.864

38 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.8    128        0    4.2
Qui1     Qui    40.1    147        0    7.0
Qui2     Qui    29.4    204        0    8.9
Qui3     Qui    15.2    171        0    8.6
Qui4     Qui    32.4    102        0    4.5
Rio1     Rio     0.0    189        0    6.2
Rio2     Rio     0.0    119        0    4.0
Rio3     Rio    11.9    135        0    5.5
Rio4     Rio     1.7    121        0    6.2