Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    131470721 T>G  Pum=0.0  Qui=0.714  Rio=0.0
    131470741 C>T  Pum=0.0  Qui=0.909  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      6        0   11.0
Qui1     Qui    33.3     12        1   16.5
Qui2     Qui     0.0     22        1   25.0
Qui3     Qui     0.0     18        0   20.5
Qui4     Qui    42.9      7        0    9.0
Rio1     Rio   100.0     14        0   15.0
Rio2     Rio   100.0      5        0    7.0
Rio3     Rio   100.0     11        0   15.0
Rio4     Rio    87.5     16        0   17.0