Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 26
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

21 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     5.6    125        0    7.8
Qui1     Qui    56.7     67        0    5.3
Qui2     Qui    26.0    100        0    6.4
Qui3     Qui     3.3    120        0    8.0
Qui4     Qui    22.1     77        0    6.5
Rio1     Rio    95.3    107        0   10.3
Rio2     Rio    87.3     63        0    6.5
Rio3     Rio    82.9     70        0    7.1
Rio4     Rio    79.8    124        0   10.6