Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    131439554 C>T  Pum=0.1  Qui=0.657  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      2        0   11.5
Qui1     Qui              0        1    7.0
Qui2     Qui     0.0      1        1   10.0
Qui3     Qui     0.0      2        1   10.0
Qui4     Qui     0.0      3        1   14.0
Rio1     Rio   100.0      4        0   17.0
Rio2     Rio   100.0      3        0    9.0
Rio3     Rio              0        0    9.0
Rio4     Rio   100.0      4        0   12.0