Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    131437422 G>A  Pum=  Qui=0.889  Rio=0.0
    131437439 C>T  Pum=0.9  Qui=0.5  Rio=0.0

1 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      1        0   10.5
Qui1     Qui    33.3      3        0   13.0
Qui2     Qui     0.0      3        0    8.0
Qui3     Qui     0.0      2        0    6.0
Qui4     Qui     0.0      1        0    6.5
Rio1     Rio   100.0      7        0   17.0
Rio2     Rio   100.0      3        0   11.0
Rio3     Rio   100.0      1        0    5.0
Rio4     Rio   100.0      5        0   11.0