Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    130935773 C>T  Pum=0.167  Qui=1.0  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.3      6        0   12.0
Qui1     Qui     0.0      6        0    8.0
Qui2     Qui     0.0      5        1    8.0
Qui3     Qui     0.0      7        1   11.0
Qui4     Qui     0.0      3        1   10.0
Rio1     Rio   100.0      5        0   10.0
Rio2     Rio    25.0      4        0   10.5
Rio3     Rio    50.0      2        0    9.0
Rio4     Rio   100.0      4        0   10.0