Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 48
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 6  [CpG-destroying: 1]
    130931038 A>G  Pum=0.0  Qui=0.943  Rio=0.0
    130931041 G>T  Pum=  Qui=1.0  Rio=0.0
    130931062 T>C  Pum=0.0  Qui=1.0  Rio=0.0
    130931887 C>T  Pum=0.0  Qui=1.0  Rio=0.0
    130931935 T>C  Pum=0.0  Qui=0.778  Rio=0.0
    130931961 A>T  Pum=0.0  Qui=0.5  Rio=0.0

6 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0     19        0   10.0
Qui1     Qui    56.2     16        1    6.6
Qui2     Qui    80.0      5        1    7.9
Qui3     Qui    62.5      8        1    7.1
Qui4     Qui    71.4     21        1    9.0
Rio1     Rio   100.0     17        0    8.7
Rio2     Rio   100.0      7        0    7.4
Rio3     Rio    83.3      6        0    7.9
Rio4     Rio    94.7     19        0    8.8