Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    130929148 T>G  Pum=0.0  Qui=0.792  Rio=0.0
    130929156 G>A  Pum=0.0  Qui=1.0  Rio=0.0
    130929198 C>T  Pum=0.0  Qui=1.0  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      6        0   13.0
Qui1     Qui     0.0      7        1   10.0
Qui2     Qui     0.0      4        0    6.0
Qui3     Qui     0.0     11        0   13.0
Qui4     Qui     0.0      5        0    7.0
Rio1     Rio    80.0      5        0    8.0
Rio2     Rio    50.0      4        0    6.5
Rio3     Rio   100.0      9        0    9.0
Rio4     Rio   100.0     11        0   14.0