Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    130913124 A>C  Pum=0.0  Qui=0.824  Rio=0.0
    130913141 G>A  Pum=0.0  Qui=1.0  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    90.0     10        0   10.0
Qui1     Qui     0.0      7        1   10.0
Qui2     Qui     0.0      7        0    8.0
Qui3     Qui     0.0     12        0   12.0
Qui4     Qui     0.0      4        0    4.0
Rio1     Rio   100.0     10        0   10.5
Rio2     Rio   100.0      8        0   10.0
Rio3     Rio   100.0      4        0    4.0
Rio4     Rio   100.0      8        0    9.0