Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    130828476 G>C  Pum=0.2  Qui=0.895  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0      5        0    7.0
Qui1     Qui     0.0      6        0    9.5
Qui2     Qui     0.0      6        0   11.0
Qui3     Qui     0.0      3        0    7.0
Qui4     Qui     0.0      5        0    6.0
Rio1     Rio   100.0      4        0    6.0
Rio2     Rio    87.5      8        0   10.0
Rio3     Rio   100.0      8        0    8.0
Rio4     Rio    85.7      7        0   10.0