Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    130802838 C>T  Pum=0.0  Qui=0.75  Rio=0.0
    130802889 A>T  Pum=0.0  Qui=1.0  Rio=0.026

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    77.8      9        0   14.0
Qui1     Qui     0.0      3        0    5.0
Qui2     Qui     0.0      9        0   11.0
Qui3     Qui     0.0      7        0    7.0
Qui4     Qui     0.0      6        1   10.0
Rio1     Rio    50.0      8        0    9.5
Rio2     Rio   100.0      6        0    9.0
Rio3     Rio    75.0      4        0    6.0
Rio4     Rio   100.0      7        0   11.5