Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 37
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 0]
    130777003 T>A  Pum=0.167  Qui=0.783  Rio=0.0
    130777020 G>T  Pum=0.2  Qui=1.0  Rio=0.0
    130777465 G>T  Pum=0.0  Qui=0.667  Rio=0.0
    130777549 A>G  Pum=0.0  Qui=0.81  Rio=0.0
    130777718 C>A  Pum=0.0  Qui=1.0  Rio=0.0

6 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    88.0     50        0   11.0
Qui1     Qui    59.4     32        0    7.6
Qui2     Qui    63.2     38        0    9.2
Qui3     Qui    63.3     30        0    7.7
Qui4     Qui    72.4     29        0    8.1
Rio1     Rio    86.8     53        0   14.5
Rio2     Rio    63.0     27        0    8.2
Rio3     Rio    62.5     24        0    6.7
Rio4     Rio    82.1     39        0    9.2