Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 31
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 10  [CpG-destroying: 4]
    130776034 G>A  Pum=  Qui=1.0  Rio=0.0
    130776429 T>A  Pum=0.0  Qui=1.0  Rio=0.0
    130776455 A>C  Pum=0.0  Qui=0.625  Rio=0.0
    130776540 T>A  Pum=0.0  Qui=0.647  Rio=0.0
    130776595 G>T  Pum=0.0  Qui=1.0  Rio=0.0
    130776624 T>A  Pum=0.0  Qui=1.0  Rio=0.0
    130776795 C>T  Pum=  Qui=1.0  Rio=0.0
    130776849 G>A  Pum=0.0  Qui=1.0  Rio=0.043
    130776915 G>A  Pum=0.0  Qui=1.0  Rio=0.0
    130776961 A>G  Pum=0.0  Qui=0.944  Rio=0.038

12 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    92.9     70        0    8.3
Qui1     Qui    68.5     54        0    5.3
Qui2     Qui    66.7     63        0    8.2
Qui3     Qui    71.4     63        1    7.5
Qui4     Qui    70.6     17        1    4.2
Rio1     Rio    89.8     59        1    7.6
Rio2     Rio    95.5     67        0    8.9
Rio3     Rio    90.2     61        0    6.3
Rio4     Rio    93.3     60        0    9.2