Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    130761430 C>T  Pum=0.0  Qui=1.0  Rio=0.0
    130761441 G>T  Pum=0.0  Qui=1.0  Rio=0.0
    130761458 C>T  Pum=0.0  Qui=1.0  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    87.5      8        0   13.5
Qui1     Qui     0.0      3        1    7.0
Qui2     Qui     0.0      2        1    5.5
Qui3     Qui     0.0      3        1   11.0
Qui4     Qui    25.0      4        0    4.0
Rio1     Rio   100.0      1        0    6.5
Rio2     Rio   100.0      2        0    7.0
Rio3     Rio    75.0      4        0    6.5
Rio4     Rio    80.0      5        0   12.5