Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 3]
    130759246 A>T  Pum=0.0  Qui=0.522  Rio=0.0
    130759256 G>A  Pum=  Qui=0.917  Rio=0.0
    130759279 G>A  Pum=  Qui=1.0  Rio=0.0
    130759285 C>T  Pum=0.0  Qui=0.875  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      2        0    9.5
Qui1     Qui     0.0      4        0   10.0
Qui2     Qui     0.0      2        0    5.0
Qui3     Qui     0.0      4        0    9.0
Qui4     Qui     0.0      1        0    2.0
Rio1     Rio   100.0      2        0    9.0
Rio2     Rio   100.0      2        0    8.0
Rio3     Rio    60.0      5        0    8.0
Rio4     Rio    60.0      5        0   10.0