Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    130752780 G>A  Pum=0.0  Qui=0.711  Rio=0.0
    130752812 G>A  Pum=0.0  Qui=0.75  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7     12        0   13.0
Qui1     Qui     0.0      1        0    1.0
Qui2     Qui     0.0     17        0   18.0
Qui3     Qui    16.7      6        0    6.0
Qui4     Qui     0.0     14        0   15.0
Rio1     Rio    75.0     12        0   13.0
Rio2     Rio   100.0     12        0   13.0
Rio3     Rio   100.0     11        0   10.5
Rio4     Rio   100.0     12        0   14.0