Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    130752489 G>A  Pum=0.0  Qui=0.649  Rio=0.0
    130752507 C>T  Pum=  Qui=0.583  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.3      6        0    8.0
Qui1     Qui     0.0      9        1   13.0
Qui2     Qui     0.0     14        0   16.0
Qui3     Qui     0.0      7        1   10.0
Qui4     Qui     0.0      7        1   10.0
Rio1     Rio    72.7     11        0   15.0
Rio2     Rio    75.0      8        0   10.0
Rio3     Rio    85.7      7        0    8.5
Rio4     Rio    60.0     10        0   14.0