Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 26
  seen in >= 2 oysters: 12
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 10  [CpG-destroying: 6]
    130752307 C>T  Pum=  Qui=1.0  Rio=0.0
    130752344 G>A  Pum=0.125  Qui=0.8  Rio=0.0
    130752489 G>A  Pum=0.0  Qui=0.649  Rio=0.0
    130752507 C>T  Pum=  Qui=0.583  Rio=0.0
    130752615 A>T  Pum=0.375  Qui=0.897  Rio=0.044
    130752662 A>G  Pum=0.2  Qui=0.938  Rio=0.02
    130752780 G>A  Pum=0.0  Qui=0.711  Rio=0.0
    130752812 G>A  Pum=0.0  Qui=0.75  Rio=0.0
    130752836 T>C  Pum=0.0  Qui=0.72  Rio=0.0
    130752903 A>T  Pum=0.1  Qui=0.889  Rio=0.0

27 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    74.7    233        0   10.0
Qui1     Qui    70.5    129        1    6.9
Qui2     Qui    50.4    266        0   11.3
Qui3     Qui    73.7    118        1    6.1
Qui4     Qui    64.0    189        1    7.9
Rio1     Rio    82.6    207        0   10.9
Rio2     Rio    89.4    189        0    8.0
Rio3     Rio    91.1    146        0    6.6
Rio4     Rio    87.6    185        0    8.4