Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    130750584 T>A  Pum=0.111  Qui=1.0  Rio=0.026
    130750608 G>A  Pum=  Qui=1.0  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      1        0    8.0
Qui1     Qui    16.7      6        0   16.0
Qui2     Qui     0.0      5        0    7.0
Qui3     Qui     0.0      6        0   13.0
Qui4     Qui     0.0      1        0    5.0
Rio1     Rio   100.0      5        0    9.0
Rio2     Rio   100.0      1        0    8.0
Rio3     Rio   100.0      1        0    4.0
Rio4     Rio   100.0      3        0   14.0