Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    130722553 A>T  Pum=0.0  Qui=0.959  Rio=0.0
    130722564 A>T  Pum=0.0  Qui=0.978  Rio=0.0
    130722584 C>T  Pum=0.0  Qui=1.0  Rio=0.0
    130722585 C>A  Pum=0.0  Qui=1.0  Rio=0.0
    130722607 G>A  Pum=  Qui=1.0  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7      3        0    7.0
Qui1     Qui              0        0   16.0
Qui2     Qui              0        0   11.0
Qui3     Qui              0        0    6.0
Qui4     Qui              0        0    8.5
Rio1     Rio   100.0      1        0    5.0
Rio2     Rio   100.0      5        0   12.0
Rio3     Rio   100.0      2        0    8.0
Rio4     Rio   100.0      7        0   12.0