Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    130691439 A>G  Pum=0.0  Qui=0.972  Rio=0.0
    130691462 G>A  Pum=0.0  Qui=1.0  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.0     15        0   15.0
Qui1     Qui     0.0      9        0   17.5
Qui2     Qui     0.0      7        0    8.0
Qui3     Qui     0.0      3        0    6.0
Qui4     Qui     0.0      6        0    7.0
Rio1     Rio    76.9     13        0   16.0
Rio2     Rio   100.0      5        0    7.5
Rio3     Rio   100.0      3        0    6.5
Rio4     Rio    83.3      6        0   14.5