Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    130686595 C>A  Pum=0.25  Qui=1.0  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7      3        0    8.5
Qui1     Qui              0        0   11.0
Qui2     Qui   100.0      1        0   10.5
Qui3     Qui              0        0   11.5
Qui4     Qui              0        0    8.5
Rio1     Rio   100.0      4        0   17.0
Rio2     Rio   100.0      2        0    8.0
Rio3     Rio   100.0      4        0   10.0
Rio4     Rio   100.0      4        0    8.0