Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 6  [CpG-destroying: 2]
    130660107 A>T  Pum=0.0  Qui=0.5  Rio=0.0
    130660504 T>A  Pum=0.0  Qui=1.0  Rio=0.053
    130660604 C>T  Pum=0.0  Qui=1.0  Rio=0.071
    130660700 G>T  Pum=0.0  Qui=1.0  Rio=0.0
    130660725 C>T  Pum=0.0  Qui=0.947  Rio=0.0
    130660792 C>A  Pum=0.0  Qui=1.0  Rio=0.0

14 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    94.3     35        0    6.3
Qui1     Qui    64.0     25        1    3.8
Qui2     Qui    69.8     43        1    6.1
Qui3     Qui    77.4     53        1    7.7
Qui4     Qui    61.5     26        1    3.9
Rio1     Rio    98.2     55        0    7.6
Rio2     Rio    88.9     27        0    4.4
Rio3     Rio    93.9     49        0    5.4
Rio4     Rio    94.1     34        0    4.5