Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    70.0     10        0   19.0
Qui1     Qui    18.2     11        0   11.0
Qui2     Qui    25.0      8        0    8.0
Qui3     Qui    10.0     10        0   11.5
Qui4     Qui    33.3      3        0    3.0
Rio1     Rio    41.7     12        0   19.5
Rio2     Rio    80.0     10        0   17.0
Rio3     Rio    50.0      8        0   17.0
Rio4     Rio    37.5      8        0   18.0