Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 14
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    130310006 C>T  Pum=  Qui=0.125  Rio=0.923

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3      3        0    5.0
Qui1     Qui    60.0      5        0   15.0
Qui2     Qui   100.0      1        0    6.0
Qui3     Qui    50.0      4        0    8.0
Qui4     Qui              0        0    5.0
Rio1     Rio     0.0      6        0    8.0
Rio2     Rio    33.3      3        1    7.0
Rio3     Rio    25.0      4        1    7.0
Rio4     Rio    20.0      5        1    8.5