Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

7 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    52.9     17        0    9.0
Qui1     Qui    38.5     13        0    6.0
Qui2     Qui    80.0     10        0    5.1
Qui3     Qui    68.8     16        0    7.3
Qui4     Qui    75.0     16        0    6.9
Rio1     Rio    42.9      7        0    6.1
Rio2     Rio    64.3     14        0    7.5
Rio3     Rio    83.3     12        0    6.5
Rio4     Rio    50.0     12        0    7.0