Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    32.0     25        1   44.0
Qui1     Qui    11.1      9        0   23.0
Qui2     Qui    13.6     22        0   35.0
Qui3     Qui    20.7     29        0   59.0
Qui4     Qui     8.7     23        0   34.5
Rio1     Rio    34.6     26        0   38.0
Rio2     Rio    43.8     16        0   28.0
Rio3     Rio    30.8     13        0   23.0
Rio4     Rio    46.7     15        0   33.5