Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    16.7      6        0   11.0
Qui1     Qui     0.0      4        0    8.5
Qui2     Qui     0.0     12        0   19.0
Qui3     Qui     0.0      5        1   12.0
Qui4     Qui     0.0      4        1    7.0
Rio1     Rio    40.0      5        0    8.5
Rio2     Rio    54.5     11        1   19.0
Rio3     Rio    50.0      2        0    5.0
Rio4     Rio    40.0      5        0    7.0