Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    7002372 C>T  Pum=  Qui=0.538  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    88.9      9        0   12.0
Qui1     Qui    57.1      7        1   14.0
Qui2     Qui    54.5     11        0   12.5
Qui3     Qui    44.4      9        1   12.0
Qui4     Qui    50.0      6        0    8.0
Rio1     Rio   100.0     13        0   18.0
Rio2     Rio   100.0      6        0   11.0
Rio3     Rio   100.0      4        0    9.0
Rio4     Rio   100.0      2        0   11.0