Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 43
  seen in >= 2 oysters: 21
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    6564694 A>C  Pum=0.077  Qui=0.694  Rio=0.03
    6564741 A>G  Pum=0.0  Qui=0.519  Rio=0.0

61 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0   12.1
Qui1     Qui              0        1   13.7
Qui2     Qui              0        1   13.4
Qui3     Qui              0        0   16.7
Qui4     Qui              0        0   17.3
Rio1     Rio     0.0     14        0   23.5
Rio2     Rio     0.0     19        0   15.6
Rio3     Rio              0        0   16.2
Rio4     Rio     0.0      9        1   16.3