Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    6561750 A>G  Pum=0.083  Qui=0.584  Rio=0.0
    6561773 T>C  Pum=0.083  Qui=0.543  Rio=0.042

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0   12.0
Qui1     Qui              0        0   18.0
Qui2     Qui              0        0   23.0
Qui3     Qui              0        0   22.0
Qui4     Qui   100.0      1        0   15.5
Rio1     Rio              0        0   17.5
Rio2     Rio              0        0    6.0
Rio3     Rio              0        0   13.0
Rio4     Rio              0        0    8.0