Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    6561750 A>G  Pum=0.083  Qui=0.584  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0    9.0
Qui1     Qui     0.0      1        0   21.0
Qui2     Qui              0        0   22.5
Qui3     Qui              0        0   21.5
Qui4     Qui   100.0      1        0   15.0
Rio1     Rio              0        0   15.0
Rio2     Rio              0        0    5.5
Rio3     Rio     0.0      1        0   14.0
Rio4     Rio              0        0    9.0