Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 60
  seen in >= 2 oysters: 24
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    6561750 A>G  Pum=0.083  Qui=0.584  Rio=0.0
    6561773 T>C  Pum=0.083  Qui=0.543  Rio=0.042

63 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0    116        0    9.4
Qui1     Qui     9.0    167        3   10.1
Qui2     Qui     1.3    151        1   11.4
Qui3     Qui     0.0    169        0   12.3
Qui4     Qui    20.2    114        1    9.0
Rio1     Rio     1.5    130        0   12.0
Rio2     Rio     0.0     70        0    7.5
Rio3     Rio     0.0     91        0    9.2
Rio4     Rio     0.7    151        0   10.3