Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 14
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    6213828 G>A  Pum=0.25  Qui=0.514  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0    7.5
Qui1     Qui    20.0     10        1   16.0
Qui2     Qui    37.5      8        0   14.0
Qui3     Qui    55.6      9        1   13.0
Qui4     Qui    25.0      8        1   17.0
Rio1     Rio    88.9      9        0   12.0
Rio2     Rio    83.3      6        0    7.0
Rio3     Rio   100.0      3        0    5.0
Rio4     Rio   100.0      2        0   11.5