Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    6133002 T>C  Pum=0.0  Qui=0.659  Rio=0.015
    6133078 T>C  Pum=0.083  Qui=0.595  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0     14        0   14.5
Qui1     Qui    61.5     13        0   13.5
Qui2     Qui    84.6     13        0   13.0
Qui3     Qui    63.6     11        0   11.0
Qui4     Qui    57.1      7        0    7.0
Rio1     Rio    92.9     14        0   14.5
Rio2     Rio    92.9     14        0   16.0
Rio3     Rio    94.4     18        0   18.0
Rio4     Rio    93.3     15        0   14.5