Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

21 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    36.8     38        0    4.9
Qui1     Qui    21.6     51        0    5.3
Qui2     Qui    42.1     19        0    4.8
Qui3     Qui    21.4     42        1    6.8
Qui4     Qui    43.2     37        1    5.9
Rio1     Rio    45.2     42        0    5.4
Rio2     Rio    33.3     18        0    5.7
Rio3     Rio    56.6     53        0    6.5
Rio4     Rio    56.8     37        0    6.8