Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    35088864 C>A  Pum=  Qui=0.889  Rio=0.261

1 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0    8.5
Qui1     Qui     0.0      4        0    9.0
Qui2     Qui              0        0   11.5
Qui3     Qui    25.0      4        0   13.5
Qui4     Qui              0        0   11.0
Rio1     Rio    50.0      4        0   12.5
Rio2     Rio   100.0      2        0   11.0
Rio3     Rio    50.0      6        0   13.0
Rio4     Rio    57.1      7        0   12.0