Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 36
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 3]
    32453163 G>A  Pum=1.0  Qui=0.875  Rio=0.261
    32453168 G>A  Pum=1.0  Qui=0.875  Rio=0.25
    32453285 G>A  Pum=1.0  Qui=0.833  Rio=0.333
    32453676 T>A  Pum=1.0  Qui=0.786  Rio=0.111

10 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    79.6     49        0   16.5
Qui1     Qui    71.4     21        0    4.1
Qui2     Qui    29.4     34        0   12.6
Qui3     Qui    34.9     63        0   11.6
Qui4     Qui    31.4     35        0    9.8
Rio1     Rio    87.9     33        0    7.8
Rio2     Rio    48.7     39        0    8.8
Rio3     Rio    64.3     14        0    6.3
Rio4     Rio    86.2     29        0    7.2