Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

27 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     28        0    5.4
Qui1     Qui    34.2    114        0    8.1
Qui2     Qui    95.7     46        0    6.1
Qui3     Qui    50.6     77        0    5.7
Qui4     Qui    52.8     53        0    7.1
Rio1     Rio     3.7     54        0    7.6
Rio2     Rio     0.0     29        0    4.6
Rio3     Rio     0.0      8        0    3.7
Rio4     Rio     2.4     41        0    6.4