Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    25890358 C>T  Pum=  Qui=0.214  Rio=0.75

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0     11        0   15.0
Qui1     Qui     0.0      2        0    7.0
Qui2     Qui    50.0      2        0    6.5
Qui3     Qui    80.0      5        0    8.0
Qui4     Qui    50.0      2        0    5.0
Rio1     Rio   100.0      5        0   11.0
Rio2     Rio   100.0      8        0   14.0
Rio3     Rio   100.0      7        0    8.0
Rio4     Rio   100.0      7        0   14.5