Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 56
  seen in >= 2 oysters: 23
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    13954574 G>T  Pum=0.0  Qui=0.895  Rio=0.346

12 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    26.0    100        1    7.6
Qui1     Qui     1.6     63        0    7.4
Qui2     Qui     0.0     99        1   14.2
Qui3     Qui     0.0     58        0    7.9
Qui4     Qui    20.3     74        1    7.1
Rio1     Rio    28.5    137        0   15.4
Rio2     Rio    42.3     97        0   10.4
Rio3     Rio    29.0     31        1    8.8
Rio4     Rio    53.8     52        1   11.3