Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.5     37        0    6.1
Qui1     Qui    23.1     39        0    7.1
Qui2     Qui    23.5     34        0    5.9
Qui3     Qui    36.6     41        0    5.5
Qui4     Qui    39.6     48        0    5.2
Rio1     Rio    66.7     66        0    7.0
Rio2     Rio    72.3     47        0    6.7
Rio3     Rio    58.7     46        0    5.4
Rio4     Rio    44.9     49        0    6.7