Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    61730209 G>T  Pum=  Qui=0.5  Rio=0.0
    61730210 G>T  Pum=  Qui=0.5  Rio=0.0
    61730442 G>A  Pum=0.0  Qui=0.643  Rio=0.0
    61730888 G>A  Pum=0.0  Qui=0.611  Rio=0.0

27 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     1.5    135        0    9.2
Qui1     Qui    39.1     64        0    6.1
Qui2     Qui    19.4     93        0    6.8
Qui3     Qui    47.7    132        0    8.4
Qui4     Qui    31.2     77        0    6.7
Rio1     Rio     6.2    130        0    9.1
Rio2     Rio     0.6    178        0    8.2
Rio3     Rio     2.9    138        0    7.2
Rio4     Rio     5.1    156        0    7.9