Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    21.6     37        0   13.3
Qui1     Qui     0.0     68        1   13.8
Qui2     Qui     0.0     34        0   10.9
Qui3     Qui    41.2     51        0   14.9
Qui4     Qui    31.0     58        1   12.2
Rio1     Rio    75.4     61        1   14.6
Rio2     Rio    55.4     56        0   12.7
Rio3     Rio    62.1     29        0    9.9
Rio4     Rio    73.1     52        0   14.9