Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    48.4     31        0    5.0
Qui1     Qui    21.6     37        0    5.2
Qui2     Qui    36.8     19        0    4.2
Qui3     Qui    38.5     26        0    5.5
Qui4     Qui    36.8     38        0    5.0
Rio1     Rio    41.9     31        0    5.5
Rio2     Rio    50.0     30        0    4.9
Rio3     Rio    52.6     19        0    3.4
Rio4     Rio    35.9     39        0    5.5