Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 9  [CpG-destroying: 5]
    43453019 G>A  Pum=0.0  Qui=0.515  Rio=0.0
    43453491 G>A  Pum=0.0  Qui=0.622  Rio=0.026
    43453510 T>A  Pum=0.0  Qui=0.647  Rio=0.0
    43453595 A>G  Pum=0.0  Qui=0.652  Rio=0.0
    43453618 T>G  Pum=0.0  Qui=0.591  Rio=0.0
    43453620 G>A  Pum=0.0  Qui=0.619  Rio=0.0
    43453631 G>A  Pum=0.0  Qui=0.636  Rio=0.0
    43453728 T>G  Pum=  Qui=0.727  Rio=0.0
    43453760 G>A  Pum=  Qui=0.696  Rio=0.0

14 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     1.0    101        0    8.5
Qui1     Qui     9.8     41        0    3.6
Qui2     Qui     0.0     88        0    6.5
Qui3     Qui     9.1     66        0    6.0
Qui4     Qui     5.7     88        0    7.7
Rio1     Rio    82.0    111        0    9.3
Rio2     Rio    80.4    107        0    8.3
Rio3     Rio    32.9     76        0    5.8
Rio4     Rio    78.8    146        0   12.1