Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 50
  seen in >= 2 oysters: 15
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 12  [CpG-destroying: 1]
    43452202 G>T  Pum=  Qui=0.625  Rio=0.0
    43452224 G>T  Pum=  Qui=0.667  Rio=0.0
    43452237 T>A  Pum=  Qui=0.591  Rio=0.0
    43452338 A>G  Pum=0.0  Qui=0.517  Rio=0.0
    43452395 T>A  Pum=0.0  Qui=0.625  Rio=0.0
    43452671 A>G  Pum=0.1  Qui=0.562  Rio=0.029
    43452782 T>A  Pum=0.0  Qui=0.55  Rio=0.0
    43452828 A>T  Pum=0.0  Qui=0.652  Rio=0.0
    43452883 G>T  Pum=0.0  Qui=0.571  Rio=0.0
    43452905 G>A  Pum=0.0  Qui=0.577  Rio=0.0
    43452931 T>A  Pum=0.0  Qui=0.581  Rio=0.0
    43452936 A>G  Pum=0.0  Qui=0.613  Rio=0.038

11 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     7.1     42        0    5.6
Qui1     Qui    17.6     34        0    5.6
Qui2     Qui    17.2     58        0    5.0
Qui3     Qui     0.0     41        0    5.7
Qui4     Qui    27.7     65        0    7.4
Rio1     Rio    76.4     55        0    6.6
Rio2     Rio    76.7     43        0    4.8
Rio3     Rio    54.0     50        0    4.8
Rio4     Rio    84.0     75        0    7.3