Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 16
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    18747984 T>C  Pum=1.0  Qui=0.0  Rio=0.688

20 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      1        0   13.5
Qui1     Qui     0.0      2        0    7.0
Qui2     Qui              0        0    9.7
Qui3     Qui              0        0   10.1
Qui4     Qui     0.0      2        0    7.4
Rio1     Rio              0        0   11.9
Rio2     Rio   100.0      7        0   14.0
Rio3     Rio              0        0   10.6
Rio4     Rio              0        0   11.9